Our Applications
Tools developed and maintained by the UFHCI BCB-SR team for reproducible omics data analysis
DECODeR
Differential Exploration of Counts-based Omics Data in R. Analysis and visualization of counts data derived from bulk RNA-seq or related assays.
HeatPath
Instantly generate gene expression heatmaps from your uploaded RNA-seq counts by searching pathway databases or uploading lists of pathways.
ClusterPicker
Interactively explore and extract feature clusters from heatmaps.
Peak Reporter
Generate a comprehensive differential analysis and interactive report from the output of nf-core/atacseq, nf-core/cutandrun, or other peak-calling pipelines. This is only available on the UF network. Contact our team for access.
RNA-seq Reporter
Generate a comprehensive differential analysis and interactive report from the output of nf-core/rnaseq. This is only available on the UF network. Contact our team for access.
Metabo-Tools
Fast, flexible analysis of untargeted metabolomics intensity data, including batch-correction. This app is under development.
Project Management Tools
Internal tools for project tracking and workflow management
Getting Help & Ideas
Questions about applications or need analysis support? Have an idea for a new app?
Looking for another app? We also host external applications
External tools hosted locally for enhanced security and performance compared to public servers
Icarus - Single-cell data visualization ExpressAnalyst - Gene expression analysis